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Category: Transcriptomics

PhageExpressionAtlas
Genomics Transcriptomics

PhageExpressionAtlas

TrustPCA is an advanced tool for Principal Component Analysis (PCA) of ancient human genomic data, providing an estimation of projection uncertainty of genotype…
bacteria dual RNA-seq genomics phages Transcriptomics
TSSpredator-Web
Transcriptomics

TSSpredator-Web

RNA deep-sequencing technologies (RNA-seq) are able to provide detailed insights into the transcriptomic structures of eukaryotic and prokaryotic organisms. This…
Genome viewer Prokaryotes Transcription start sites TSS classification
TSS-Captur
Transcriptomics

TSS-Captur

TSS-Captur is a novel pipeline that uses different computational approaches to characterize genomic regions starting from experimentally confirmed, but unclassified…
Prokaryotes promoter motifs Transcription start sites TSS classification unclassified transcripts
GO-Compass
Proteomics Transcriptomics

GO-Compass

GO-Compass takes multiple lists of genes as an input and computes GO term enrichment, resulting in lists of GO terms…
dispensability reduction Gene Ontology semantic similarity Treemaps
OmicsTIDE
Multi-Omics Proteomics Transcriptomics

OmicsTIDE

Omics Trend-comparing Interactive Data Explorer (OmicsTIDE) is an interactive visualization tool developed to address the limitations of current visualization approaches…
GO enrichment multi-omics profiles Sankey plots trend comparisons
Transcriptomics

DeSEQ2-Vis

An R-shiny app that allows interactively using the DeSeq2 R package in a user-friendly web app without any programming expertise.…
DeSeq2 differential expression R Shiny Transcriptomics
Genomics Transcriptomics

inPHAP

This software is no longer maintained, but still running inPHAP is our interactive phased haplotype visualization tool, featuring a variety…
haplotypes
MayDay
Multi-Omics Transcriptomics

MayDay

This software is no longer maintained, but still running Mayday is a microarray data analysis platform and is designed to…
clustering microarrays RNA-seq Transcriptomics Visual Analytics

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