Genomics – TueVis

PhageExpressionAtlas

TrustPCA is an advanced tool for Principal Component Analysis (PCA) of ancient human genomic data, providing an estimation of projection uncertainty of genotype…

Genomics

TrustPCA

TrustPCA is an advanced tool for Principal Component Analysis (PCA) of ancient human genomic data, providing an estimation of projection uncertainty of genotype…

ancient genomics PCA population genetics uncertainty

Genomics

MUSIAL

MUSIAL is a web platform that computes prokaryotic genome, gene and protein sequence alignments from variant call datasets (using both…

genotypes Prokaryotes proteoforms sequence-structure visualization variant-based alignment and analysis

Genomics Phylogenomics

BLASTphylo

BLASTphylo is an interactive web tool developed to compute and visualize taxonomic and phylogenetic trees of homologous proteins and genes.…

BLAST phylogeny taxonomy

Genomics Phylogenomics

Evidente

Evidente allows the interactive visualisation of phylogenetic trees together with SNP-data and metadata. Furthermore, it allows to compute an enrichment…

(non-)supporting SNPs enrichment SNP-based phylogenies

Genomics

VIPurPCA offers a visualization of uncertainty propagated through the dimensionality reduction technique Principal Component Analysis (PCA) by automatic differentiation. Link: https://integrative-transcriptomics.github.io/VIPurPCA/docs/

automatic differentiation PCA uncertainty

Genomics

GenomeRing

Whole genome alignment visualization based on SuperGenome coordinates. Whole-genome alignments elucidate similarity and diversity on different scales, GenomeRing highlights both similarity…

circular Genome architecture Prokaryotes SuperGenome

Genomics

Transcriptomics

inPHAP

This software is no longer maintained, but still running inPHAP is our interactive phased haplotype visualization tool, featuring a variety…

haplotypes

Genomics

Pan-Tetris

This software is no longer maintained, but still running Pan-Tetris is our interactive software tool that enables the visual inspection…

gene occurrence pangenomics Prokaryotes SuperGenome